Statistics of noncoding RNAs: alignment and secondary structure prediction
S. K. Nechaev 1, 2, 3, M. V. Tamm 4, O. V. Valba 1, 5 Journal of Physics A Mathematical and Theoretical 44 (2011) 195001 A new statistical method of alignment of two heteropolymers which can form hierarchical cloverleaf-like secondary structures is proposed. This offers a new constructive algorithm for quantitative determination of binding free energy of two noncoding RNAs with arbitrary primary sequences. […]
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